In a medium mixing bowl, combine the flours, baking soda, baking powder, salt, nutmeg, and cinnamon together in a large mixing bowl. Whisk together and set aside.
Using a large blender, add the eggs, eggnog, cottage cheese, vanilla extract, honey and melted butter into the blender. Blend until smooth.
Pour the blended wet ingredients into the dry. Mix until just combined, being careful not to over-mix. Is ok if there are lumps.
Heat a lightly greased skillet or griddle over medium-low heat. Once hot, spoon the pancakes on to skillet, making either 4 large or 6 small pancakes.
Cook until the edges are starting to cook and the bottom of the pancake is golden brown. Flip and cook the other side until golden brown.
Serve immediately with topping of choice, such as butter and maple syrup